Today we are excited to announce that all 9000+ applications provided by the BioContainers community are available within ECR Public Gallery! You don’t need an AWS account to access these images, but having one allows many more pulls to the …
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In this post, we describe how to orchestrate protein folding jobs on AWS Batch. We also compare the performance of OpenFold and AlphaFold on a set of public targets. Finally, we will discuss how to optimize your protein folding costs. Read …
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AWS service teams continuously improve the underlying infrastructure and operations of managed services, and AWS Batch is no exception. The AWS Batch team recently moved most of their job scheduler fleet to a serverless infrastructure model …
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In this blog post, we demonstrate how to leverage the AWS Genomics Command line and Amazon SageMaker to analyze large-scale exome sequences and derive meaningful insights. We use the bioinformatics workflow manager Nextflow, it’s open …
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This blog post explains how to run parallel rendering workloads and produce an animation in a cost and time effective way using AWS Batch and AWS Step Functions. AWS Batch manages the rendering jobs on Amazon Elastic Compute Cloud (Amazon …
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In this blog post, we’ll show how you can run NVIDIA Parabricks on AWS Batch leveraging AWS CloudFormation templates. Parabricks is a GPU-accelerated tool for secondary genomic analysis. It reduces the runtime of variant calling on a 30x …
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In this blog post, we help you understand the AWS Batch job termination process and how you may take actions to gracefully terminate a job by capturing SIGTERM signal inside the application. It provides you with an efficient way to exit …
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The AWS Batch team recently added container insights and advanced logging features to the Batch console, which is making a LOT of people very happy. We decided to catch up with the dev team in Seattle who worked on this, and one of my …
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