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Data Science workflows at insitro: how redun uses the advanced service features from AWS Batch and AWS Glue

Matt Rasmussen, VP of Software Engineering at insitro, expands on his first post on redun, insitro’s data science tool for bioinformatics, to describe how redun makes use of advanced AWS features. Specifically, Matt describes how AWS …

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Data Science workflows at insitro: using redun on AWS Batch

Matt Rasmussen, VP of Software Engineering at insitro describes their recently released, open-source data science framework, redun, which allows data scientists to define complex scientific workflows that scale from their laptop to …

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Analytical processing of millions of cell images using Amazon EFS and Amazon S3

Analytical workloads such as batch processing, high performance computing, or machine learning inference often have high IOPS and low latency requirements but operate at irregular intervals on subsets of large datasets. Typically, data is …

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Synchronize your Oracle databases quickly and easily with Amazon FSx for OpenZFS

Synchronizing a fleet of Oracle database environments can become a major operational burden for organizations of all sizes. In this blog post, I explain how you can reduce operational complexity, improve agility, and reduce costs by using …

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Genomics workflow set made easy with AWS Genomics CLI

The AWS Genomics CLI (or AGC) seriously removes all the grunt work involved in setting up bioinformatics pipelines to run in the cloud. We know that Snakemake, Cromwell, NextFlow and miniWDL all work happily in the cloud on AWS Batch, but …

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Creating a digital map of COVID-19 virus for discovery of new treatment compounds

Quantum physics and high-performance computing have slashed research times for a consortium of researchers led by Qubit Pharmaceuticals. This post describes the discovery of chemical substances that may lead to new COVID-19 treatments in …

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Community Detection using Hybrid Quantum Annealing on Amazon Braket – Part 2

As of 11/17/2022, D-Wave is no longer available on Amazon Braket and has transitioned to the AWS Marketplace. Therefore, information on this page may be outdated. Learn more. Many customers are facing the challenge of efficiently extracting …

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Multi-user in ParallelCluster with LDAP and MS Active Directory

Customers have been asking us to make it easy to configure ParallelCluster to use a corporate directory server, so adding a user to the cloud HPC stack becomes as easy as adding them to (say) the Engineering Group in Active Directory or …

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