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Genomics workflow set made easy with AWS Genomics CLI

The AWS Genomics CLI (or AGC) seriously removes all the grunt work involved in setting up bioinformatics pipelines to run in the cloud. We know that Snakemake, Cromwell, NextFlow and miniWDL all work happily in the cloud on AWS Batch, but …

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Creating a digital map of COVID-19 virus for discovery of new treatment compounds

Quantum physics and high-performance computing have slashed research times for a consortium of researchers led by Qubit Pharmaceuticals. This post describes the discovery of chemical substances that may lead to new COVID-19 treatments in …

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Community Detection using Hybrid Quantum Annealing on Amazon Braket – Part 2

As of 11/17/2022, D-Wave is no longer available on Amazon Braket and has transitioned to the AWS Marketplace. Therefore, information on this page may be outdated. Learn more. Many customers are facing the challenge of efficiently extracting …

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Multi-user in ParallelCluster with LDAP and MS Active Directory

Customers have been asking us to make it easy to configure ParallelCluster to use a corporate directory server, so adding a user to the cloud HPC stack becomes as easy as adding them to (say) the Engineering Group in Active Directory or …

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Migrating to AWS ParallelCluster v3 – Updated CLI interactions

The AWS ParallelCluster version 3 CLI differs significantly from ParallelCluster version 2. This post provides some guidance on mapping between versions to help you with migrating to ParallelCluster 3. We also summarize new CLI features in …

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Applying classical benchmarking methodologies to create a principled quantum benchmark suite

In this post, we will discuss the current landscape of quantum benchmarking and introduce SupermarQ, Super.tech’s suite of application-based benchmarks designed to overcome the limitations of existing approaches. SupermarQ uses Amazon …

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OpenZFS created quickly with checkpoints, backups and big performance

We launched Amazon FSx for OpenZFS at re:invent in December, and well let’s just say it’s been more than a bit popular :-)

ZFS and it’s friends have been a long time favorite of the HPC community, so we asked Delwin …

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Choosing between AWS Batch or AWS ParallelCluster for your HPC Workloads

It’s an understatement that AWS has a lot of services (more than 200 at the time of this post!). We’re usually the first to point out that there’s more than one way to solve a problem. HPC is no different in this regard, because we offer a …

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